Soft Whole Wheat Pretzels
Whole wheat pretzels offer a delicious twist on the classic snack, combining a chewy texture with a subtle nutty flavor. Rich in fiber and nutrients, they offer a healthier alternative to traditional white-flour pretzels. Enjoy them plain or with your favorite dips for a wholesome treat.

Pretzels, with their distinctive twisted shape and satisfying chewy texture, have long been a favorite snack worldwide. Originating from Europe, these beloved baked goods are known for their shiny, golden crust sprinkled with coarse salt, making them a perfect balance of savory and slightly sweet flavors. Their versatility makes them a popular choice, whether enjoyed plain, with dips, or as part of a larger meal.
Making pretzels with whole wheat flour instead of white flour is a fantastic idea for several reasons. Whole wheat flour is richer in fiber, vitamins, and minerals, making the pretzels not only delicious but also more nutritious. The higher fiber content aids digestion and provides a feeling of fullness, which can help with maintaining a balanced diet. Additionally, whole wheat flour adds a subtle nutty flavor and hearty texture to the pretzels, enhancing their overall taste and appeal. By opting for whole-wheat pretzels, you’re making a healthier choice without compromising the delightful pretzel experience.
Why is this the best recipe?
- Healthier Option: This recipe uses whole wheat flour, which is higher in fiber and nutrients compared to white flour. This makes the pretzels a healthier snack option.
- Authentic Flavor and Texture: The combination of bread flour and whole wheat flour ensures that the pretzels have the perfect balance of chewiness and softness, replicating the authentic pretzel texture.
- No Special Equipment Needed: You don’t need any special equipment to make these pretzels. Simple kitchen tools and ingredients are all that’s required, making it convenient for home baking.
- Delicious Fresh Out of the Oven: There’s nothing like the taste of freshly baked pretzels, warm from the oven. This recipe ensures that you get to enjoy them at their best, with a delightful homemade flavor that can’t be matched by store-bought pretzels.

Ingredients and substitutes
- Active Dry Yeast: The yeast is a leavening agent that helps the dough rise, giving the pretzels their soft and chewy texture. It activates when mixed with warm water and sugar, creating carbon dioxide that makes the dough expand. If you don’t have active dry yeast, you can substitute it with instant yeast. Use the same amount, but note that instant yeast doesn’t need to be dissolved in water first.
- Warm Water: Warm water (110°F to 115°F) activates the yeast and helps to dissolve the sugar and salt. The temperature is crucial; if the water is too hot, it can kill the yeast, and if it’s too cold, the yeast won’t activate properly. There’s no direct substitute for water, but you could use milk to add a richer flavor to the dough, ensuring it is also at the correct temperature.
- Granulated Sugar: Sugar feeds the yeast, helping it to ferment and produce carbon dioxide, which leavens the dough. It also adds a touch of sweetness to balance the whole wheat flour’s nuttiness. You can substitute sugar with honey or maple syrup in the same amount to add a different flavor profile to the pretzels.
- Salt: Salt enhances the flavor of the pretzels and helps to tighten the gluten structure in the dough, contributing to the chewy texture. It also controls yeast activity during fermentation. If you’re looking to reduce sodium, you can use a salt substitute like potassium chloride, but be aware that it may alter the taste slightly.
- Bread Flour: Bread flour contains a higher protein content than all-purpose flour, which helps to develop more gluten and results in a chewier pretzel. If you don’t have bread flour, you can substitute it with all-purpose flour, though the texture might be slightly less chewy.
- Whole Wheat Flour: Whole wheat flour adds a nutty flavor and increases the fiber content of the pretzels, making them a healthier option. If you prefer, you can use white whole wheat flour for a milder taste and lighter color, or substitute it with all-purpose flour if you want a less dense pretzel.
- Baking Soda: Baking soda is used in the boiling water bath before baking. It gives pretzels their distinctive brown crust and slightly tangy flavor. There’s no real substitute for baking soda in this context, as it’s essential for achieving the characteristic pretzel texture and color.
- Coarse Salt and Sesame Seeds: Coarse salt is traditionally sprinkled on pretzels for a burst of flavor and crunchy texture. Sesame seeds can be added for extra flavor and visual appeal. If you prefer, you can use other toppings like poppy seeds, everything bagel seasoning, or even cinnamon sugar for a sweet twist.

Step-by-step: Whole wheat pretzels
- Prepare the Dough: In a large bowl, dissolve the yeast in warm water. Add the sugar, oil, and salt to the yeast mixture and stir to combine. Gradually add the bread flour, followed by the whole wheat flour, mixing until the dough comes together. Knead for about 8-10 minutes, until it becomes smooth and elastic. If the dough is too sticky, add a little more flour as needed.

- First Rise: Place the dough in a lightly greased bowl, cover it with a clean kitchen towel or plastic wrap, and let it rise in a warm place for about 1 hour, or until it has doubled in size.
- Oven: Preheat your oven to 425°F / 220°C / Gas mark 6 and line two baking sheets with parchment paper.
- Shape the Pretzels: Punch down the dough and turn it out onto a lightly floured surface. Divide the dough into 12 equal pieces. Roll each piece of dough into a long rope (about 18 inches long). Shape each rope into a pretzel by forming a U shape, crossing the ends over each other, and pressing them onto the bottom of the U to form the classic pretzel shape.

- Prepare the Baking Soda Bath: In a large pot, bring 6 cups of water to a boil. Slowly add the baking soda (be careful as it will bubble up). Using a slotted spoon, gently lower each pretzel into the boiling water one at a time. Boil for about 30 seconds, then remove and place on the prepared baking sheets.
- Bake the Pretzels: Brush each pretzel with the beaten egg wash and sprinkle with coarse salt or sesame seeds if desired. Bake in the preheated oven for 12-15 minutes or until the pretzels are golden brown.
- Cool and Serve: Remove the pretzels from the oven and let them cool on a wire rack for a few minutes before serving.



My favorite pretzel dipping sauce
- Cheese Sauce: Melted cheese mixed with a bit of milk or cream and flavored with mustard and garlic powder. Perfect for dipping savory pretzels like garlic parmesan or cheddar jalapeño.
- Honey Mustard Sauce: Mix honey, mustard, mayonnaise, and a bit of vinegar. Ideal for classic salted pretzels or pretzel dogs.
- Chocolate Ganache: Melt chocolate with a bit of heavy cream until smooth. Great for dipping sweet pretzels like cinnamon sugar or chocolate-dipped pretzels.
- Caramel Sauce: Cook sugar until it caramelizes, then mix with butter and cream. Excellent with caramel pretzels or chocolate-dipped pretzels.
- Cinnamon Sugar Pretzels
- Soft Sesame Pretzels Recipe
- Easy Homemade Pretzels
- Whole Wheat Dinner Rolls
- Whole Wheat Sandwich Bread
Frequently asked questions
Pretzels can be kept at room temperature for three days if well wrapped. You can also keep the baked whole wheat pretzels in the freezer for up to 3 months.
Yes, you can make the dough ahead of time. After the first rise, punch down the dough and refrigerate it overnight. Let it come to room temperature before shaping and proceeding with the recipe.
Yes, you can use all-purpose flour instead of bread flour. However, bread flour’s higher protein content gives the pretzels a chewier texture, while all-purpose flour will result in a slightly softer pretzel.
You can customize your pretzels with various toppings such as poppy seeds, everything bagel seasoning, shredded cheese, garlic powder, or cinnamon sugar for a sweet version.
Brushing the pretzels with an egg wash before baking helps achieve a shiny, golden crust. If you prefer an egg-free option, you can use milk or a water-cornstarch mixture.
Boiling the pretzels in baking soda water gelatinizes the dough’s surface, giving the pretzels their characteristic chewy texture and deep brown color when baked.
Yes, you can make mini pretzels by dividing the dough into smaller portions and rolling shorter ropes. Adjust the baking time accordingly, checking for doneness around 8-10 minutes.

Soft Whole Wheat Pretzels
Whole wheat pretzels offer a delicious twist on the classic snack, combining a chewy texture with a subtle nutty flavor. Rich in fiber and nutrients, they provide a healthier alternative to traditional white flour pretzels. Enjoy them plain or with your favorite dips for a wholesome treat.
Video
Ingredients
- 390 g (3¼ cups) Whole wheat flour
- 130 g (1 cups) Bread flour or all-purpose flour
- 360 g (1½ cups) Warm water 110F /45C
- 7 g (2¼ tsp) Instant dry yeast
- 9 g (1½ tsp) Kosher salt
- 12 g (1 tsp) Sugar or honey
- 28 g (2 tbsp) Cooking Oil or melted butter
- 6 cups (1½ ltr) Water
- 4 tbsp (¼ cup) Baking soda
- 1 Egg beaten
- 1 tbsp Sea salt, sesame seeds,
Method
- Prepare the Dough: In a large bowl, dissolve the yeast in warm water. Add the sugar, oil, and salt to the yeast mixture and stir to combine. Gradually add the bread flour, followed by the whole wheat flour, mixing until the dough comes together. Knead for about 8-10 minutes, until it becomes smooth and elastic. If the dough is too sticky, add a little more flour as needed.390 g Whole wheat flour, 130 g Bread flour, 360 g Warm water, 7 g Instant dry yeast, 9 g Kosher salt, 12 g Sugar, 28 g Cooking Oil
- First Rise: Place the dough in a lightly greased bowl, cover it with a clean kitchen towel or plastic wrap, and let it rise in a warm place for about 1 hour, or until it has doubled in size.
- Oven: Preheat your oven to 425°F / 220°C / Gas mark 6 and line two baking sheets with parchment paper.
- Shape the Pretzels: Punch down the dough and turn it out onto a lightly floured surface. Divide the dough into 12 equal pieces. Roll each piece of dough into a long rope (about 18 inches long). Shape each rope into a pretzel by forming a U shape, crossing the ends over each other, and pressing them onto the bottom of the U to form the classic pretzel shape.
- Prepare the Baking Soda Bath: In a large pot, bring 6 cups of water to a boil. Slowly add the baking soda (be careful as it will bubble up). Using a slotted spoon, gently lower each pretzel into the boiling water one at a time. Boil for about 30 seconds, then remove and place on the prepared baking sheets.6 cups Water, 4 tbsp Baking soda
- Bake the Pretzels: Brush each pretzel with the beaten egg wash and sprinkle with coarse salt or sesame seeds if desired. Bake in the oven for 12-15 minutes, or until the pretzels are golden brown.1 Egg
- Cool and Serve: Remove the pretzels from the oven and let them cool on a wire rack for a few minutes before serving.1 tbsp Sea salt, sesame seeds,
Notes
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- Use Fresh Ingredients: Ensure your yeast is fresh and within its expiration date for the best rise. Use whole wheat flour and other ingredients that are within their freshness dates to ensure a great flavor.
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- Measure Accurately: Precise measurements are crucial in baking. Use a kitchen scale to measure the flour, especially, as it can be compacted and may vary in weight when using cups.
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- Mix the Flours: Combining whole wheat flour with some bread flour (or all-purpose flour) can help improve the texture of the pretzels without compromising on the whole wheat flavor.
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- Proper Kneading: Knead the dough until it’s smooth and elastic. This helps develop gluten, giving the pretzels a better texture. Use the additional bread flour for kneading to prevent sticking, but don’t overdo it; add only as needed.
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- Ideal Dough Consistency: The dough should be slightly sticky but still manageable. Adjust the water or flour as needed to achieve this consistency.
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- Proof the Yeast: Dissolve the yeast and sugar in warm water and allow it to sit for 5-10 minutes until it becomes frothy. This ensures that the yeast is active and the dough will rise properly.
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- Rest the Dough: Let the dough rest for 10-15 minutes after kneading to relax the gluten. This makes it easier to shape the pretzels.
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- Shaping Pretzels: Roll the dough into a rope, then form it into a U shape. Cross the ends over each other and press them onto the bottom of the U shape to create the classic pretzel shape. You can also get creative with pretzel shapes, such as pretzel bites or pretzel twists.
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- Boiling Step: Boil the pretzels in a baking soda water bath before baking. This gives them their classic pretzel flavor and browned exterior.
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- Bake at the Right Temperature: Preheat your oven to the specified temperature and bake until the pretzels are golden brown.
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- Egg Wash and Toppings: Brush the pretzels with an egg wash (beaten egg with a bit of water) before baking to give them a shiny finish. Sprinkle coarse salt, sesame seeds, or other desired toppings on the pretzels before baking for added flavor and texture.
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- Enjoy Fresh: Pretzels are best enjoyed fresh out of the oven when they are still warm and soft. Serve with mustard, cheese sauce, or your favorite dipping sauce.
- Practice Makes Perfect: Don’t be discouraged if your first batch isn’t perfect. Pretzel-making can take a bit of practice, but the results are worth it.
- Make-ahead instructions
- You can prepare the dough a day ahead of time. Keeping pretzel dough overnight enhances its flavor. Bring it to room temperature before you shape and water bathe it.
- Pretzel dough can be frozen for up to a month in the freezer.
- Baked pretzels will keep in the freezer for up to 3 months.
- To reheat pretzels, bake frozen pretzels for 20 minutes at 170 °C/ 340°F.
- Bread machine
- Pretzel dough can be easily made in a bread machine. Pour all ingredients into the pan set to dough or manual. Start and let the dough run its cycle for about 9 to 10 minutes – continue with the recipe as shown above.
Our favorite pretzel dips
- Yogurt dip – combine
- 1 cup yogurt, plain
- 1 tbsp mustard
- 2 tbsp tomato ketchup
- Salt and pepper to taste
- Cream cheese dip – combine
- 1 cup cream cheese
- 1 tbsp hot sauce – like sriracha
- 1 tsp cayenne
- Salt and pepper to taste
- Creamy mustard sauce – combine
- 1 cup mayonnaise
- 2 tbsp tomato ketchup
- 2 tbsp mustard
- Salt and pepper to taste.
Equipment you will need
Nutrition
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We love pretzels. I have made it myself though and always buy from the stores. I am so happy that i can try it at home now with your recipe.
Thanks, Gunjan. I hope you make these
Oh Veena, this is just great! My kids love ordering the soft, chewy “pub” pretzels that so many restaurants have on their appetizer menus, and I love that I can make something similar at home – but a little bit healthier with some whole wheat flour for added fiber and nutrients! Thank you!
I hope you try it Shelly. Thanks
So I have been ADDICTED to soft pretzels since I was a kid. But I never even thought of making them at home. Definitely have to try your recipe since here in Sweden there’s really no place to even get the “real deal”.
They are so easy to make Emmeline
These look so delicious and tasty! My family is going to love these! So excited to make this recipe!
Thank you, Beth
I have only made pretzels once. This look fantastic. I love bread, so these are right up my alley.
Thank you, Gloria
These pretzels look gorgeous. Thanks for all the tips too because I’ve never tried making these before.
Thank you, Amanda.
These look delicious and easier than I thought it would be to make pretzels. Must give them a try!
Thank you, Sue.