Luscious Lemon Blueberry Cupcakes
Indulge in the perfect balance of zesty lemon and sweet blueberry flavors with these delightful cupcakes. Moist and tender, each bite offers a burst of citrusy freshness complemented by juicy blueberries. Topped with a creamy swirl of cream cheese frosting, these cupcakes are a delightful treat for any occasion.

Lemon desserts, such as cupcakes, are incredibly popular due to their vibrant and refreshing flavor profile. The tangy zest of lemon adds a bright, zesty note that awakens the taste buds and provides a refreshing contrast to the dessert’s sweetness. Lemon desserts are also versatile, as they can be both light and indulgent, making them suitable for a wide range of preferences and occasions.
Lemon cupcakes offer a bright and refreshing flavor that is perfectly complemented by the sweet and juicy burst of blueberries. The tangy zest of lemon adds a zingy freshness to the cupcakes, while the blueberries provide a delightful contrast with their natural sweetness. Together, they create a harmonious blend of flavors that is both uplifting and comforting, making them a perfect treat for any occasion.
Why are these the best cupcakes?
- Flavor Combination: The combination of zesty lemon and sweet blueberries creates a delightful balance of flavors that is both refreshing and indulgent.
- Moisture: Adding sour cream to the cupcake batter helps keep the cupcakes moist and tender, ensuring a soft texture with every bite.
- Texture: The cream cheese frosting adds a creamy and tangy element that pairs perfectly with the light and fluffy texture of the cupcakes, creating a satisfying mouthfeel.
- Versatility: This recipe is adaptable to different dietary needs, such as using gluten-free flour or dairy-free cream cheese for a vegan option.
- Presentation: The cupcakes are visually appealing, with the vibrant blueberry filling and the swirl of cream cheese frosting adding a touch of elegance to any dessert table.
- Ease of Preparation: Despite having multiple components (cupcakes, filling, and frosting), the recipe is straightforward and can be made by bakers of all skill levels, making it accessible and enjoyable to bake.

Ingredients and substitutes
- Butter: Adds moisture and richness to the cupcakes. You can also use margarine or shortening as a substitute, but the flavor and texture may be slightly different.
- Sugar: Sweetens the cupcakes and helps to create a tender crumb. You can also use alternative sweeteners like honey, maple syrup, or stevia, but the texture and flavor may change.
- Eggs: Provide structure and stability to the cupcakes. For each egg, you can also use 1/4 cup of unsweetened applesauce or mashed banana as a substitute, but this may alter the texture.
- Sour Cream: Adds moisture and a slight tangy flavor to the cupcakes. You can also use Greek yogurt as a substitute for sour cream in equal amounts.
- AP Flour: Provides structure and helps to hold the cupcakes together. Gluten-free flour blends can be used for a gluten-free version of the recipe.
- Baking Powder and Baking Soda: Leavening agents that help the cupcakes rise and become light and fluffy.
- Lemon Juice and Lemon Zest: Add a bright, citrusy flavor to the cupcakes. You can use lime juice and zest as substitutes for a different citrus flavor.
- Blueberries: Provide a burst of sweet-tart flavor and add moisture to the cupcakes. You can use other berries like raspberries or blackberries as a substitute.
- Cream Cheese: Forms the base of the frosting and adds richness. Mascarpone cheese or a dairy-free cream cheese alternative can be used.
- Powdered Sugar: Sweetens the frosting and helps to thicken it. You can make a glaze using honey or maple syrup mixed with a small amount of cornstarch, but it will have a different texture.

Step-by-step instructions
- Lemon cupcakes: Preheat your oven to 350°F / 175°C / Gas mark 4 and line a muffin pan with cupcake liners.

- Dry Ingredients: In a separate bowl, whisk together the flour, baking powder, baking soda, and salt.
- Cupcake Batter: In a large bowl, cream the butter and sugar until light and fluffy. Add the eggs, one at a time, beating well after each addition. Mix in the lemon juice, lemon zest, and vanilla extract.
- Wet and Dry Ingredients: Gradually add the dry ingredients to the wet ingredients with the sour cream, mixing until combined. Do not overmix.
- Cupcake Liners: Divide the batter evenly among the cupcake liners, filling each about 2/3 full.
- Bake: Transfer to the oven and bake for 18-20 minutes, or until a toothpick inserted into the center comes out clean. Allow the cupcakes to cool completely.

- Blueberry Filling: In a small saucepan, combine the blueberries, sugar, water, and cornstarch. Cook over medium heat, stirring frequently, until the mixture thickens and the blueberries burst. Remove from heat and let cool.
- Fill the Cupcakes: Use a cupcake corer or a knife to core the center of each cupcake, about halfway down. Spoon the cooled blueberry filling into the cored center of each cupcake. Return part of the core in place.

- Cream Cheese Frosting: In a medium bowl, beat the cream cheese and butter until smooth and creamy. Add powdered sugar, 1 cup at a time, until the desired sweetness and consistency are reached. Mix in the vanilla extract.

- Frost the Cupcakes: Transfer the cream cheese frosting to a piping bag fitted with a large star tip. Pipe a swirl of frosting on each cupcake, covering the blueberry filling.
- Serve and Enjoy: Serve the cupcakes immediately or store them in an airtight container in the refrigerator.

Tips for Success
- Room Temperature Ingredients: Make sure your butter, eggs, and sour cream are at room temperature before starting. This helps them mix together smoothly and evenly.
- Proper Mixing: Mix the batter until just combined after adding the dry ingredients. Overmixing can lead to dense and tough cupcakes.
- Even Filling: Fill the cupcake liners evenly to ensure that all cupcakes bake at the same rate and have a consistent size.
- Cool Blueberry Filling: Allow the blueberry filling to cool completely before filling the cupcakes. This prevents it from melting the frosting or making the cupcakes soggy.
- Chilled Frosting: Make sure your cream cheese frosting is chilled before piping it onto the cupcakes. This helps it hold its shape and makes it easier to work with.
- Use Fresh Blueberries: If possible, use fresh blueberries for the filling and garnish. They have a better texture and flavor than frozen blueberries.
- Storage: Store the cupcakes in an airtight container in the refrigerator. They are best enjoyed within a few days of baking.
- Experiment: Feel free to experiment with different fillings or frosting flavors to suit your taste preferences. Raspberry filling or a lemon buttercream frosting would also be delicious with these cupcakes.

- Mini Lemon Cheesecake Tarts or Lemon Curd Tart
- Lemon Crinkle Cookies or Lemon Butter Cookies
- Blueberry Cheesecake – Baked
- Blueberry Muffins Recipe
- and Blueberry Bars – Cream Cheese
- See all blueberry recipes or see all lemon recipes
Frequently asked questions
Store leftover cupcakes in an airtight container in the refrigerator for up to three days. Allow them to come to room temperature before serving for the best taste and texture.
Yes, you can use frozen blueberries in this recipe. Thaw them before adding to the batter or filling, and be aware that they may release more moisture than fresh blueberries.
Yes, you can freeze the unfilled and unfrosted cupcakes for up to three months. Thaw them at room temperature before filling, frosting, and serving.
Yes, you can use a different frosting if you prefer. A lemon buttercream or whipped cream frosting would both be delicious with these cupcakes.
Yes, you can make these cupcakes gluten-free by using a gluten-free flour blend in place of the all-purpose flour. Be sure to check that all other ingredients are also gluten-free.
Yes, you can bake the cupcakes ahead of time and store them in an airtight container at room temperature for up to two days. Wait to fill and frost them until just before serving for the best texture.
Yes, you can make these cupcakes vegan by using dairy-free butter, sour cream, and cream cheese alternatives. You can also use a flaxseed or chia seed egg replacement for the eggs.
Yes, you can use a different fruit filling if you prefer. Raspberry, strawberry, or blackberry filling would all work well with the lemon cupcakes.

Lemon Blueberry Cupcakes
Indulge in the perfect balance of zesty lemon and sweet blueberry flavors with these delightful cupcakes. Moist and tender, each bite offers a burst of citrusy freshness complemented by juicy blueberries. Topped with a creamy swirl of cream cheese frosting, these cupcakes are a delightful treat for any occasion.
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Ingredients
- 1½ cup (190 g) All-purpose flour
- 1 tsp Baking powder
- ½ tsp Baking soda
- ¼ tsp Salt
- ½ cup (113 g) Unsalted butter softened
- 1 cup (200 g) Granulated sugar
- 2 large Eggs
- 2 tbsp Fresh lemon juice
- 1 tbsp Lemon zest
- ½ cup (115 g) Sour cream
- ½ tsp Vanilla extract
- 1 cup (150 g) Fresh or frozen blueberries
- 2-3 tbsp Granulated sugar
- 1 tbsp Water
- 1 tsp Cornstarch
- 8 oz (226 g) Cream cheese softened
- ½ cup (113 g) Unsalted butter softened
- 3-4 cups (360 g) Powdered sugar
- 1 tsp Vanilla extract
Method
- Lemon cupcakes: Preheat your oven to 350°F /175°C/ Gas mark 4 and line a muffin pan with cupcake liners.
- Dry Ingredients: In a separate bowl, whisk together the flour, baking powder, baking soda, and salt.1½ cup All-purpose flour, 1 tsp Baking powder, ½ tsp Baking soda, ¼ tsp Salt
- Cupcake Batter: In a large bowl, cream the butter and sugar until light and fluffy. Add the eggs, one at a time, beating well after each addition. Mix in the lemon juice, lemon zest, and vanilla extract.½ cup Unsalted butter, 1 cup Granulated sugar, 2 large Eggs, 2 tbsp Fresh lemon juice, 1 tbsp Lemon zest, ½ tsp Vanilla extract
- Wet and Dry Ingredients: Gradually add the dry ingredients to the wet ingredients with the sour cream, mixing until combined. Do not overmix.½ cup Sour cream
- Cupcake Liners: Divide the batter evenly among the cupcake liners, filling each about 2/3 full.
- Bake: Transfer to the oven and bake for 18-20 minutes, or until a toothpick inserted into the center comes out clean. Allow the cupcakes to cool completely.
- Blueberry Filling: In a small saucepan, combine the blueberries, sugar, water, and cornstarch. Cook over medium heat, stirring frequently, until the mixture thickens and the blueberries burst. Remove from heat and let cool.1 cup Fresh or frozen blueberries, 2-3 tbsp Granulated sugar, 1 tbsp Water, 1 tsp Cornstarch
- Fill the Cupcakes: Use a cupcake corer or a knife to core the center of each cupcake, about halfway down. Spoon the cooled blueberry filling into the cored center of each cupcake. Return part of the core back in place.
- Cream Cheese Frosting: In a medium bowl, beat the cream cheese and butter until smooth and creamy. Add powdered sugar, 1 cup at a time, until desired sweetness and consistency are reached. Mix in the vanilla extract.8 oz Cream cheese, ½ cup Unsalted butter, 3-4 cups Powdered sugar, 1 tsp Vanilla extract
- Frost the Cupcakes: Transfer the cream cheese frosting to a piping bag fitted with a large star tip. Pipe a swirl of frosting on each cupcake, covering the blueberry filling.
- Serve and Enjoy: Serve the cupcakes immediately or store them in an airtight container in the refrigerator.
Notes
- Room Temperature Ingredients: Make sure your butter, eggs, and sour cream are at room temperature before starting. This helps them mix together smoothly and evenly.
- Proper Mixing: Mix the batter until just combined after adding the dry ingredients. Overmixing can lead to dense and tough cupcakes.
- Even Filling: Fill the cupcake liners evenly to ensure that all cupcakes bake at the same rate and have a consistent size.
- Cool Blueberry Filling: Allow the blueberry filling to cool completely before filling the cupcakes. This prevents it from melting the frosting or making the cupcakes soggy.
- Chilled Frosting: Make sure your cream cheese frosting is chilled before piping it onto the cupcakes. This helps it hold its shape and makes it easier to work with.
- Use Fresh Blueberries: If possible, use fresh blueberries for the filling and garnish. They have a better texture and flavor than frozen blueberries.
- Storage: Store the cupcakes in an airtight container in the refrigerator. They are best enjoyed within a few days of baking.
- Experiment: Feel free to experiment with different fillings or frosting flavors to suit your taste preferences. Raspberry filling or a lemon buttercream frosting would also be delicious with these cupcakes.
Equipment you will need
Nutrition
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Just made these cupcakes – we loved them! There were gone in an instant. I have more blueberries coming in next week and I plan to make a double batch again. Thanks for the lovely recipes. I love your blog because all your recipes are through.
Thank you so much Ferdinand for the lovely feedback. I am so happy you enjoyed these cupcakes and love my recipes.Have a great day.
How many cupcakes does this recipe make? The yield says 18, but the comments say 12.
Hey Vivia. You can make about 12 cupcakes with this recipe. Thanks
Yum! I could never get enough cupcakes, and this combo sounds great! Can’t wait to try it! Thank you
Lemon and blueberry is such a delicious combination. These cupcakes look amaing.
Such a nice recipe. Love blueberries and cupcakes! Thank you!
I’ve never made filled cupcakes before – I should try that! Those would definitely be a lot of fun to make, especially with the fruit filling 🙂
I’m kinda addicted to filling my cupcakes Sarah.. I love the added extra inside..
Veena you share the best cupcake recipes! I love the filling. Filled cupcakes are so much fun. You get a little surprise with each bite.
Aww thank you Arelene – I love cupcake recipes – Exactly – I love Filled cupcakes.
Cupcakes with a little surprise in the middle are so nice. Love the combination of these along with the cream cheese frosting.
Thank you Gloria..! Yeah I love to have these little surprises in side too!